J3_6S12_014
3D structure
- PDB id
- 6S12 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 6S12|1|A|U|494, 6S12|1|A|C|502
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6S12_014 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.2618
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
6S12|1|A|C|32
6S12|1|A|U|33
6S12|1|A|U|34
6S12|1|A|G|35
*
6S12|1|A|C|491
6S12|1|A|G|492
6S12|1|A|A|493
6S12|1|A|U|494
6S12|1|A|A|495
6S12|1|A|G|496
6S12|1|A|U|497
6S12|1|A|G|498
6S12|1|A|A|499
6S12|1|A|A|500
6S12|1|A|C|501
6S12|1|A|C|502
6S12|1|A|A|503
6S12|1|A|G|504
6S12|1|A|U|505
6S12|1|A|A|506
6S12|1|A|C|507
*
6S12|1|A|G|514
6S12|1|A|G|515
6S12|1|A|A|516
6S12|1|A|A|517
6S12|1|A|A|518
6S12|1|A|G|519
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain E
- 50S ribosomal protein L4
- Chain O
- 50S ribosomal protein L20
- Chain R
- 50S ribosomal protein L23
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