J3_6S13_017
3D structure
- PDB id
- 6S13 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.58 Å
Loop
- Sequence
- CUAA*UGCAG*CAUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 6S13|1|a|U|880
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6S13_017 not in the Motif Atlas
- Homologous match to J3_4LFB_001
- Geometric discrepancy: 0.4973
- The information below is about J3_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02285.1
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6S13|1|a|C|834
6S13|1|a|U|835
6S13|1|a|A|836
6S13|1|a|A|837
*
6S13|1|a|U|866
6S13|1|a|G|867
6S13|1|a|C|868
6S13|1|a|A|869
6S13|1|a|G|870
*
6S13|1|a|C|877
6S13|1|a|A|878
6S13|1|a|U|879
6S13|1|a|U|880
6S13|1|a|A|881
6S13|1|a|A|882
6S13|1|a|G|883
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain b
- 30S ribosomal protein S2
- Chain e
- 30S ribosomal protein S5
- Chain h
- 30S ribosomal protein S8
Coloring options: