3D structure

PDB id
6S13 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.58 Å

Loop

Sequence
CUUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
6S13|1|A|U|34, 6S13|1|A|U|494
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6S13_024 not in the Motif Atlas
Homologous match to J3_9DFE_003
Geometric discrepancy: 0.2635
The information below is about J3_9DFE_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

6S13|1|A|C|32
6S13|1|A|U|33
6S13|1|A|U|34
6S13|1|A|G|35
*
6S13|1|A|C|491
6S13|1|A|G|492
6S13|1|A|A|493
6S13|1|A|U|494
6S13|1|A|A|495
6S13|1|A|G|496
6S13|1|A|U|497
6S13|1|A|G|498
6S13|1|A|A|499
6S13|1|A|A|500
6S13|1|A|C|501
6S13|1|A|C|502
6S13|1|A|A|503
6S13|1|A|G|504
6S13|1|A|U|505
6S13|1|A|A|506
6S13|1|A|C|507
*
6S13|1|A|G|514
6S13|1|A|G|515
6S13|1|A|A|516
6S13|1|A|A|517
6S13|1|A|A|518
6S13|1|A|G|519

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L34
Chain E
50S ribosomal protein L4
Chain O
50S ribosomal protein L20
Chain R
50S ribosomal protein L23

Coloring options:


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