J3_6SGC_008

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

6SGC|1|54|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SGC_008 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.0895

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

6SGC|1|54|C|2393
6SGC|1|54|G|2394
6SGC|1|54|A|2395
6SGC|1|54|A|2396
6SGC|1|54|G|2397
6SGC|1|54|U|2398
6SGC|1|54|G|2399
*
6SGC|1|54|C|2805
6SGC|1|54|A|2806
6SGC|1|54|A|2807
*
6SGC|1|54|U|2819
6SGC|1|54|C|2820
6SGC|1|54|U|2821
6SGC|1|54|G|2822

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain R2

eL19

Chain g2

eL34