J3_6SGC_009

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

6SGC|1|54|U|2788, 6SGC|1|54|A|2789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SGC_009 not in the Motif Atlas

Homologous match to J3_8C3A_007

Geometric discrepancy: 0.2599

The information below is about J3_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6SGC|1|54|G|2402
6SGC|1|54|A|2403
6SGC|1|54|A|2404
6SGC|1|54|G|2405
*
6SGC|1|54|C|2785
6SGC|1|54|C|2786
6SGC|1|54|A|2787
6SGC|1|54|U|2788
6SGC|1|54|A|2789
6SGC|1|54|U|2790
6SGC|1|54|C|2791
*
6SGC|1|54|G|2800
6SGC|1|54|U|2801
6SGC|1|54|C|2802

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain g2

eL34

Chain j2

Ribosomal protein L37

Chain l2

eL39