J3_6SGC_013

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SGC_013 not in the Motif Atlas

Geometric match to J3_7A0S_009

Geometric discrepancy: 0.2807

The information below is about J3_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6SGC|1|54|C|3937
6SGC|1|54|G|3938
6SGC|1|54|G|3939
*
6SGC|1|54|C|4074
6SGC|1|54|U|4075
6SGC|1|54|G|4076
6SGC|1|54|A|4077
6SGC|1|54|C|4078
*
6SGC|1|54|G|4168
6SGC|1|54|G|4169
6SGC|1|54|A|4170
6SGC|1|54|C|4171
6SGC|1|54|A|4172
6SGC|1|54|G|4173

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain A2

Ribosomal protein L8

Chain G2

eL8

Chain N2

Ribosomal protein L15