J3_6SGC_014
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 6SGC|1|54|C|4116, 6SGC|1|54|U|4117, 6SGC|1|54|U|4118, 6SGC|1|54|G|4121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SGC_014 not in the Motif Atlas
- Homologous match to J3_8P9A_060
- Geometric discrepancy: 0.2585
- The information below is about J3_8P9A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76247.1
- Basepair signature
- cWW-F-tHH-F-tHS-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6SGC|1|54|G|4091
6SGC|1|54|G|4092
6SGC|1|54|G|4093
6SGC|1|54|G|4094
*
6SGC|1|54|C|4114
6SGC|1|54|G|4115
6SGC|1|54|C|4116
6SGC|1|54|U|4117
6SGC|1|54|U|4118
6SGC|1|54|C|4119
6SGC|1|54|U|4120
6SGC|1|54|G|4121
6SGC|1|54|G|4122
6SGC|1|54|C|4123
6SGC|1|54|G|4124
6SGC|1|54|C|4125
6SGC|1|54|C|4126
6SGC|1|54|A|4127
6SGC|1|54|A|4128
6SGC|1|54|G|4129
*
6SGC|1|54|C|4155
6SGC|1|54|G|4156
6SGC|1|54|A|4157
6SGC|1|54|C|4158
Current chains
- Chain 54
- 28S ribosomal RNA
Nearby chains
- Chain A2
- Ribosomal protein L8
- Chain G2
- eL8
- Chain Z2
- 60S ribosomal protein L27
- Chain c2
- Ribosomal_L7Ae domain-containing protein
- Chain g2
- eL34
- Chain p2
- eL43
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