J3_6SGC_018
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CCAUAC*GG*UG
- Length
- 10 nucleotides
- Bulged bases
- 6SGC|1|74|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SGC_018 not in the Motif Atlas
- Homologous match to J3_5TBW_045
- Geometric discrepancy: 0.0862
- The information below is about J3_5TBW_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52398.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6SGC|1|74|C|9
6SGC|1|74|C|10
6SGC|1|74|A|11
6SGC|1|74|U|12
6SGC|1|74|A|13
6SGC|1|74|C|14
*
6SGC|1|74|G|65
6SGC|1|74|G|66
*
6SGC|1|74|U|109
6SGC|1|74|G|110
Current chains
- Chain 74
- 5S ribosomal RNA
Nearby chains
- Chain 54
- Large subunit ribosomal RNA; LSU rRNA
- Chain D2
- 60S ribosomal protein L5
- Chain I2
- 60S ribosomal protein L10
- Chain T2
- eL21
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