J3_6SGC_019
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AC*GAGAAUU*ACACU
- Length
- 14 nucleotides
- Bulged bases
- 6SGC|1|84|A|62, 6SGC|1|84|U|63
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SGC_019 not in the Motif Atlas
- Homologous match to J3_8C3A_060
- Geometric discrepancy: 0.1787
- The information below is about J3_8C3A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
6SGC|1|84|A|44
6SGC|1|84|C|45
*
6SGC|1|84|G|58
6SGC|1|84|A|59
6SGC|1|84|G|60
6SGC|1|84|A|61
6SGC|1|84|A|62
6SGC|1|84|U|63
6SGC|1|84|U|64
*
6SGC|1|84|A|95
6SGC|1|84|C|96
6SGC|1|84|A|97
6SGC|1|84|C|98
6SGC|1|84|U|99
Current chains
- Chain 84
- 5.8S ribosomal RNA
Nearby chains
- Chain 54
- Large subunit ribosomal RNA; LSU rRNA
- Chain X2
- Ribosomal_L23eN domain-containing protein
- Chain h2
- uL29
- Chain j2
- Ribosomal protein L37
- Chain l2
- eL39
Coloring options: