J3_6SGC_028
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CCGGAC*GGGUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 6SGC|1|A1|G|1274, 6SGC|1|A1|G|1507, 6SGC|1|A1|U|1509
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SGC_028 not in the Motif Atlas
- Homologous match to J3_4V88_038
- Geometric discrepancy: 0.1125
- The information below is about J3_4V88_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75993.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6SGC|1|A1|C|1272
6SGC|1|A1|C|1273
6SGC|1|A1|G|1274
6SGC|1|A1|G|1275
6SGC|1|A1|A|1276
6SGC|1|A1|C|1277
*
6SGC|1|A1|G|1320
6SGC|1|A1|G|1321
6SGC|1|A1|G|1322
6SGC|1|A1|U|1323
6SGC|1|A1|G|1324
*
6SGC|1|A1|U|1504
6SGC|1|A1|U|1505
6SGC|1|A1|A|1506
6SGC|1|A1|G|1507
6SGC|1|A1|A|1508
6SGC|1|A1|U|1509
6SGC|1|A1|G|1510
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain L1
- S10_plectin domain-ontaining protein
- Chain e1
- uS14
- Chain g1
- Ribosomal protein S27a
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