J3_6SJ6_013
3D structure
- PDB id
- 6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.23 Å
Loop
- Sequence
- GC*GUGAAAAGCAC*GAGUGAAAUAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 6SJ6|1|A|U|549, 6SJ6|1|A|A|553
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SJ6_013 not in the Motif Atlas
- Homologous match to J3_4WF9_011
- Geometric discrepancy: 0.1527
- The information below is about J3_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6SJ6|1|A|G|30
6SJ6|1|A|C|31
*
6SJ6|1|A|G|520
6SJ6|1|A|U|521
6SJ6|1|A|G|522
6SJ6|1|A|A|523
6SJ6|1|A|A|524
6SJ6|1|A|A|525
6SJ6|1|A|A|526
6SJ6|1|A|G|527
6SJ6|1|A|C|528
6SJ6|1|A|A|529
6SJ6|1|A|C|530
*
6SJ6|1|A|G|541
6SJ6|1|A|A|542
6SJ6|1|A|G|543
6SJ6|1|A|U|544
6SJ6|1|A|G|545
6SJ6|1|A|A|546
6SJ6|1|A|A|547
6SJ6|1|A|A|548
6SJ6|1|A|U|549
6SJ6|1|A|A|550
6SJ6|1|A|G|551
6SJ6|1|A|A|552
6SJ6|1|A|A|553
6SJ6|1|A|C|554
6SJ6|1|A|C|555
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain T
- 50S ribosomal protein L20
- Chain V
- 50S ribosomal protein L22
- Chain X
- 50S ribosomal protein L24
Coloring options: