J3_6SJ6_014
3D structure
- PDB id
- 6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.23 Å
Loop
- Sequence
- CUUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 6SJ6|1|A|U|34, 6SJ6|1|A|U|494, 6SJ6|1|A|C|502
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SJ6_014 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.2579
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
6SJ6|1|A|C|32
6SJ6|1|A|U|33
6SJ6|1|A|U|34
6SJ6|1|A|G|35
*
6SJ6|1|A|C|491
6SJ6|1|A|G|492
6SJ6|1|A|A|493
6SJ6|1|A|U|494
6SJ6|1|A|A|495
6SJ6|1|A|G|496
6SJ6|1|A|U|497
6SJ6|1|A|G|498
6SJ6|1|A|A|499
6SJ6|1|A|A|500
6SJ6|1|A|C|501
6SJ6|1|A|C|502
6SJ6|1|A|A|503
6SJ6|1|A|G|504
6SJ6|1|A|U|505
6SJ6|1|A|A|506
6SJ6|1|A|C|507
*
6SJ6|1|A|G|514
6SJ6|1|A|G|515
6SJ6|1|A|A|516
6SJ6|1|A|A|517
6SJ6|1|A|A|518
6SJ6|1|A|G|519
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 6
- 50S ribosomal protein L34
- Chain F
- 50S ribosomal protein L4
- Chain T
- 50S ribosomal protein L20
- Chain W
- 50S ribosomal protein L23
Coloring options: