J3_6SKF_019

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SKF_019 not in the Motif Atlas

Geometric match to J3_7A0S_009

Geometric discrepancy: 0.1193

The information below is about J3_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6SKF|1|BA|U|2203
6SKF|1|BA|U|2204
6SKF|1|BA|G|2205
*
6SKF|1|BA|C|2308
6SKF|1|BA|U|2309
6SKF|1|BA|A|2310
6SKF|1|BA|A|2311
6SKF|1|BA|C|2312
*
6SKF|1|BA|G|2325
6SKF|1|BA|G|2326
6SKF|1|BA|A|2327
6SKF|1|BA|C|2328
6SKF|1|BA|A|2329
6SKF|1|BA|G|2330

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2

Chain BP

50S ribosomal protein L15e