J3_6SKF_035
3D structure
- PDB id
- 6SKF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- GG*CUGAAAAGCAC*GGG(5MU)GAAAAGAGCC
- Length
- 27 nucleotides
- Bulged bases
- 6SKF|1|BA|G|545
- QA status
- Modified nucleotides: 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SKF_035 not in the Motif Atlas
- Geometric match to J3_4WF9_011
- Geometric discrepancy: 0.1271
- The information below is about J3_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
6SKF|1|BA|G|39
6SKF|1|BA|G|40
*
6SKF|1|BA|C|513
6SKF|1|BA|U|514
6SKF|1|BA|G|515
6SKF|1|BA|A|516
6SKF|1|BA|A|517
6SKF|1|BA|A|518
6SKF|1|BA|A|519
6SKF|1|BA|G|520
6SKF|1|BA|C|521
6SKF|1|BA|A|522
6SKF|1|BA|C|523
*
6SKF|1|BA|G|534
6SKF|1|BA|G|535
6SKF|1|BA|G|536
6SKF|1|BA|5MU|537
6SKF|1|BA|G|538
6SKF|1|BA|A|539
6SKF|1|BA|A|540
6SKF|1|BA|A|541
6SKF|1|BA|A|542
6SKF|1|BA|G|543
6SKF|1|BA|A|544
6SKF|1|BA|G|545
6SKF|1|BA|C|546
6SKF|1|BA|C|547
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain BE
- 50S ribosomal protein L4
- Chain BV
- 50S ribosomal protein L22
- Chain BX
- 50S ribosomal protein L24
- Chain Bi
- 50S ribosomal protein L39e
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