J3_6SKF_037

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

(4AC)GAAG*CG(B8T)CGGAGAG*(4AC)GUAG

Length

20 nucleotides

Bulged bases

6SKF|1|BA|G|360

QA status

Modified nucleotides: 4AC, B8T

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SKF_037 not in the Motif Atlas

Geometric match to J3_8VTW_041

Geometric discrepancy: 0.103

The information below is about J3_8VTW_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.1

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6SKF|1|BA|4AC|335
6SKF|1|BA|G|336
6SKF|1|BA|A|337
6SKF|1|BA|A|338
6SKF|1|BA|G|339
*
6SKF|1|BA|C|355
6SKF|1|BA|G|356
6SKF|1|BA|B8T|357
6SKF|1|BA|C|358
6SKF|1|BA|G|359
6SKF|1|BA|G|360
6SKF|1|BA|A|361
6SKF|1|BA|G|362
6SKF|1|BA|A|363
6SKF|1|BA|G|364
*
6SKF|1|BA|4AC|376
6SKF|1|BA|G|377
6SKF|1|BA|U|378
6SKF|1|BA|A|379
6SKF|1|BA|G|380

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BX

50S ribosomal protein L24