J3_6SPF_017
3D structure
- PDB id
- 6SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAUAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 6SPF|1|A|U|495, 6SPF|1|A|A|499
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SPF_017 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.1366
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
6SPF|1|A|G|30
6SPF|1|A|C|31
*
6SPF|1|A|G|465
6SPF|1|A|C|466
6SPF|1|A|G|467
6SPF|1|A|A|468
6SPF|1|A|A|469
6SPF|1|A|A|470
6SPF|1|A|A|471
6SPF|1|A|G|472
6SPF|1|A|A|473
6SPF|1|A|A|474
6SPF|1|A|C|475
*
6SPF|1|A|G|487
6SPF|1|A|A|488
6SPF|1|A|G|489
6SPF|1|A|U|490
6SPF|1|A|G|491
6SPF|1|A|A|492
6SPF|1|A|A|493
6SPF|1|A|A|494
6SPF|1|A|U|495
6SPF|1|A|A|496
6SPF|1|A|G|497
6SPF|1|A|A|498
6SPF|1|A|A|499
6SPF|1|A|C|500
6SPF|1|A|C|501
Current chains
- Chain A
- Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA
Nearby chains
- Chain Q
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L22
- Chain U
- 50S ribosomal protein L24
Coloring options: