J3_6SPF_022

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SPF_022 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.1021

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6SPF|1|A|G|1411
6SPF|1|A|G|1412
6SPF|1|A|G|1413
6SPF|1|A|A|1414
6SPF|1|A|C|1415
6SPF|1|A|G|1416
*
6SPF|1|A|C|1554
6SPF|1|A|C|1555
*
6SPF|1|A|G|1558
6SPF|1|A|A|1559
6SPF|1|A|A|1560
6SPF|1|A|A|1561
6SPF|1|A|A|1562
6SPF|1|A|G|1563
6SPF|1|A|C|1564

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2