J3_6SPF_030
3D structure
- PDB id
- 6SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- CUAG*CGCAG*CGAUAAG
- Length
- 16 nucleotides
- Bulged bases
- 6SPF|1|a|U|865, 6SPF|1|a|A|867
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SPF_030 not in the Motif Atlas
- Homologous match to J3_5J7L_004
- Geometric discrepancy: 0.2118
- The information below is about J3_5J7L_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.4
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
6SPF|1|a|C|820
6SPF|1|a|U|821
6SPF|1|a|A|822
6SPF|1|a|G|823
*
6SPF|1|a|C|851
6SPF|1|a|G|852
6SPF|1|a|C|853
6SPF|1|a|A|854
6SPF|1|a|G|855
*
6SPF|1|a|C|862
6SPF|1|a|G|863
6SPF|1|a|A|864
6SPF|1|a|U|865
6SPF|1|a|A|866
6SPF|1|a|A|867
6SPF|1|a|G|868
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain b
- 30S ribosomal protein S2
- Chain h
- 30S ribosomal protein S8
- Chain u
- 30S ribosomal protein S21
Coloring options: