J3_6SPG_024
3D structure
- PDB id
- 6SPG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.34 Å
Loop
- Sequence
- CAAUG*CGUAGUCC*GUCG
- Length
- 17 nucleotides
- Bulged bases
- 6SPG|1|a|U|1234, 6SPG|1|a|C|1296
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SPG_024 not in the Motif Atlas
- Homologous match to J3_5J7L_011
- Geometric discrepancy: 0.1871
- The information below is about J3_5J7L_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
6SPG|1|a|C|1231
6SPG|1|a|A|1232
6SPG|1|a|A|1233
6SPG|1|a|U|1234
6SPG|1|a|G|1235
*
6SPG|1|a|C|1290
6SPG|1|a|G|1291
6SPG|1|a|U|1292
6SPG|1|a|A|1293
6SPG|1|a|G|1294
6SPG|1|a|U|1295
6SPG|1|a|C|1296
6SPG|1|a|C|1297
*
6SPG|1|a|G|1328
6SPG|1|a|U|1329
6SPG|1|a|C|1330
6SPG|1|a|G|1331
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain g
- 30S ribosomal protein S7
- Chain m
- 30S ribosomal protein S13
Coloring options: