J3_6SPG_028

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SPG_028 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.1697

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6SPG|1|A|G|1411
6SPG|1|A|G|1412
6SPG|1|A|G|1413
6SPG|1|A|A|1414
6SPG|1|A|C|1415
6SPG|1|A|G|1416
*
6SPG|1|A|C|1554
6SPG|1|A|C|1555
*
6SPG|1|A|G|1558
6SPG|1|A|A|1559
6SPG|1|A|A|1560
6SPG|1|A|A|1561
6SPG|1|A|A|1562
6SPG|1|A|G|1563
6SPG|1|A|C|1564

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2