J3_6SPG_035
3D structure
- PDB id
- 6SPG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.34 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SPG_035 not in the Motif Atlas
- Homologous match to J3_4LFB_003
- Geometric discrepancy: 0.1822
- The information below is about J3_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44359.1
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6SPG|1|a|U|937
6SPG|1|a|G|938
6SPG|1|a|G|939
6SPG|1|a|A|940
*
6SPG|1|a|U|1229
6SPG|1|a|A|1230
6SPG|1|a|C|1231
*
6SPG|1|a|G|1331
6SPG|1|a|G|1332
6SPG|1|a|A|1333
6SPG|1|a|A|1334
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain i
- 30S ribosomal protein S9
- Chain m
- 30S ribosomal protein S13
Coloring options: