J3_6SV4_028
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UGA*UAAUAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 6SV4|1|2c|U|864
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SV4_028 not in the Motif Atlas
- Homologous match to J3_8C3A_034
- Geometric discrepancy: 0.2655
- The information below is about J3_8C3A_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.2
- Basepair signature
- cWW-tSH-cWW-tHW-cWW-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
6SV4|1|2c|U|633
6SV4|1|2c|G|634
6SV4|1|2c|A|635
*
6SV4|1|2c|U|861
6SV4|1|2c|A|862
6SV4|1|2c|A|863
6SV4|1|2c|U|864
6SV4|1|2c|A|865
6SV4|1|2c|G|866
*
6SV4|1|2c|C|962
6SV4|1|2c|A|963
6SV4|1|2c|U|964
6SV4|1|2c|U|965
6SV4|1|2c|A|966
Current chains
- Chain 2c
- 18S rRNA
Nearby chains
- Chain Uc
- 40S ribosomal protein S7-A
- Chain Xc
- 40S ribosomal protein S11-A
- Chain Yc
- 40S ribosomal protein S13
- Chain bc
- 40S ribosomal protein S22-A
- Chain cc
- 40S ribosomal protein S23-A
- Chain fc
- 40S ribosomal protein S27-A
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