J3_6SV4_029
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 6SV4|1|2c|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SV4_029 not in the Motif Atlas
- Homologous match to J3_8P9A_074
- Geometric discrepancy: 0.2515
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23895.1
- Basepair signature
- cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6SV4|1|2c|A|881
6SV4|1|2c|U|882
6SV4|1|2c|C|883
6SV4|1|2c|A|884
*
6SV4|1|2c|U|928
6SV4|1|2c|A|929
6SV4|1|2c|A|930
6SV4|1|2c|C|931
6SV4|1|2c|U|932
6SV4|1|2c|A|933
6SV4|1|2c|C|934
6SV4|1|2c|U|935
6SV4|1|2c|G|936
*
6SV4|1|2c|C|943
6SV4|1|2c|A|944
6SV4|1|2c|U|945
6SV4|1|2c|U|946
6SV4|1|2c|U|947
Current chains
- Chain 2c
- 18S rRNA
Nearby chains
- Chain Qc
- 40S ribosomal protein S1-A
- Chain Yc
- 40S ribosomal protein S13
- Chain Zc
- 40S ribosomal protein S14-A
- Chain ec
- 40S ribosomal protein S26-A
- Chain zT
- 60S ribosomal protein L43-A
- Chain zY
- 60S ribosomal protein L30
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