3D structure

PDB id
6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The cryo-EM structure of SDD1-stalled collided trisome.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CCAG*CUAGUAA*UGAUUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6SV4_031 not in the Motif Atlas
Homologous match to J3_4V88_035
Geometric discrepancy: 0.1372
The information below is about J3_4V88_035
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.1
Basepair signature
cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
Number of instances in this motif group
5

Unit IDs

6SV4|1|2c|C|1161
6SV4|1|2c|C|1162
6SV4|1|2c|A|1163
6SV4|1|2c|G|1164
*
6SV4|1|2c|C|1581
6SV4|1|2c|U|1582
6SV4|1|2c|A|1583
6SV4|1|2c|G|1584
6SV4|1|2c|U|1585
6SV4|1|2c|A|1586
6SV4|1|2c|A|1587
*
6SV4|1|2c|U|1609
6SV4|1|2c|G|1610
6SV4|1|2c|A|1611
6SV4|1|2c|U|1612
6SV4|1|2c|U|1613
6SV4|1|2c|A|1614
6SV4|1|2c|C|1615
6SV4|1|2c|G|1616

Current chains

Chain 2c
18S rRNA

Nearby chains

Chain Bc
Rps5p
Chain Fc
40S ribosomal protein S16-A
Chain Lc
40S ribosomal protein S28-B

Coloring options:


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