J3_6SV4_034

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

6SV4|1|2c|A|1217, 6SV4|1|2c|G|1445, 6SV4|1|2c|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SV4_034 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.1464

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

6SV4|1|2c|C|1215
6SV4|1|2c|C|1216
6SV4|1|2c|A|1217
6SV4|1|2c|G|1218
6SV4|1|2c|A|1219
6SV4|1|2c|C|1220
*
6SV4|1|2c|G|1263
6SV4|1|2c|G|1264
6SV4|1|2c|G|1265
6SV4|1|2c|U|1266
6SV4|1|2c|G|1267
*
6SV4|1|2c|U|1442
6SV4|1|2c|U|1443
6SV4|1|2c|A|1444
6SV4|1|2c|G|1445
6SV4|1|2c|A|1446
6SV4|1|2c|C|1447
6SV4|1|2c|G|1448

Current chains

Chain 2c

18S rRNA

Nearby chains

Chain Cc

40S ribosomal protein S10-A

Chain Nc

Ubiquitin-40S ribosomal protein S31