J3_6SV4_051
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 6SV4|1|BQ|G|2549, 6SV4|1|BQ|U|2550, 6SV4|1|BQ|U|2551, 6SV4|1|BQ|A|2554, 6SV4|1|BQ|U|2558, 6SV4|1|BQ|U|2559, 6SV4|1|BQ|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SV4_051 not in the Motif Atlas
- Homologous match to J3_8P9A_060
- Geometric discrepancy: 0.1912
- The information below is about J3_8P9A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76247.1
- Basepair signature
- cWW-F-tHH-F-tHS-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6SV4|1|BQ|A|2529
6SV4|1|BQ|G|2530
6SV4|1|BQ|C|2531
6SV4|1|BQ|U|2532
*
6SV4|1|BQ|A|2547
6SV4|1|BQ|C|2548
6SV4|1|BQ|G|2549
6SV4|1|BQ|U|2550
6SV4|1|BQ|U|2551
6SV4|1|BQ|C|2552
6SV4|1|BQ|U|2553
6SV4|1|BQ|A|2554
6SV4|1|BQ|G|2555
6SV4|1|BQ|C|2556
6SV4|1|BQ|A|2557
6SV4|1|BQ|U|2558
6SV4|1|BQ|U|2559
6SV4|1|BQ|C|2560
6SV4|1|BQ|A|2561
6SV4|1|BQ|A|2562
6SV4|1|BQ|G|2563
*
6SV4|1|BQ|U|2578
6SV4|1|BQ|G|2579
6SV4|1|BQ|A|2580
6SV4|1|BQ|U|2581
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L8-A
- Chain AH
- 60S ribosomal protein L25
- Chain AN
- 60S ribosomal protein L27-A
- Chain AT
- 60S ribosomal protein L43-A
- Chain AW
- 60S ribosomal protein L2-A
- Chain AY
- 60S ribosomal protein L30
- Chain BN
- 60S ribosomal protein L34-A
Coloring options: