J3_6SV4_060

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

6SV4|1|YQ|A|817, 6SV4|1|YQ|G|924

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SV4_060 not in the Motif Atlas

Homologous match to J3_8C3A_003

Geometric discrepancy: 0.1185

The information below is about J3_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6SV4|1|YQ|U|814
6SV4|1|YQ|G|815
6SV4|1|YQ|A|816
6SV4|1|YQ|A|817
6SV4|1|YQ|C|818
6SV4|1|YQ|U|819
6SV4|1|YQ|A|820
*
6SV4|1|YQ|U|905
6SV4|1|YQ|A|906
6SV4|1|YQ|G|907
*
6SV4|1|YQ|C|923
6SV4|1|YQ|G|924
6SV4|1|YQ|A|925
6SV4|1|YQ|A|926

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain XF

60S ribosomal protein L37-A

Chain XQ

60S ribosomal protein L15-A

Chain XW

60S ribosomal protein L2-A