J3_6SV4_067

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CA*UAACU*AG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SV4_067 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.1567

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6SV4|1|YQ|C|1631
6SV4|1|YQ|A|1632
*
6SV4|1|YQ|U|1641
6SV4|1|YQ|A|1642
6SV4|1|YQ|A|1643
6SV4|1|YQ|C|1644
6SV4|1|YQ|U|1645
*
6SV4|1|YQ|A|1810
6SV4|1|YQ|G|1811

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain XN

60S ribosomal protein L27-A

Chain YN

60S ribosomal protein L34-A