J3_6SV4_089

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

6SV4|1|ZQ|A|2887, 6SV4|1|ZQ|U|2888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SV4_089 not in the Motif Atlas

Homologous match to J3_8C3A_011

Geometric discrepancy: 0.1106

The information below is about J3_8C3A_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

6SV4|1|ZQ|U|2886
6SV4|1|ZQ|A|2887
6SV4|1|ZQ|U|2888
6SV4|1|ZQ|C|2889
*
6SV4|1|ZQ|G|2914
6SV4|1|ZQ|U|2915
6SV4|1|ZQ|U|2916
*
6SV4|1|ZQ|A|2930
6SV4|1|ZQ|C|2931
6SV4|1|ZQ|U|2932
6SV4|1|ZQ|A|2933
6SV4|1|ZQ|A|2934
6SV4|1|ZQ|U|2935
6SV4|1|ZQ|A|2936

Current chains

Chain ZQ

25S rRNA

Nearby chains

Chain ZA

60S ribosomal protein L3

Chain zB

60S ribosomal protein L23-A

Chain zU

60S ribosomal protein L16-A