J3_6SV4_091
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CCAUAU*AG*UG
- Length
- 10 nucleotides
- Bulged bases
- 6SV4|1|ZR|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SV4_091 not in the Motif Atlas
- Homologous match to J3_5TBW_045
- Geometric discrepancy: 0.1048
- The information below is about J3_5TBW_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52398.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6SV4|1|ZR|C|9
6SV4|1|ZR|C|10
6SV4|1|ZR|A|11
6SV4|1|ZR|U|12
6SV4|1|ZR|A|13
6SV4|1|ZR|U|14
*
6SV4|1|ZR|A|66
6SV4|1|ZR|G|67
*
6SV4|1|ZR|U|111
6SV4|1|ZR|G|112
Current chains
- Chain ZR
- 5S rRNA
Nearby chains
- Chain ZD
- 60S ribosomal protein L10
- Chain ZI
- 60S ribosomal protein L5
- Chain ZJ
- 60S ribosomal protein L21-A
- Chain ZQ
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: