J3_6SV4_114
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUAUG*CGUCAUAGAG*CGUGUG
- Length
- 21 nucleotides
- Bulged bases
- 6SV4|1|YQ|U|210
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SV4_114 not in the Motif Atlas
- Homologous match to J3_8P9A_044
- Geometric discrepancy: 0.1084
- The information below is about J3_8P9A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97456.1
- Basepair signature
- cWW-cWW-F-F-cSS-cSW-cWW-tHS-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6SV4|1|YQ|C|185
6SV4|1|YQ|U|186
6SV4|1|YQ|A|187
6SV4|1|YQ|U|188
6SV4|1|YQ|G|189
*
6SV4|1|YQ|C|205
6SV4|1|YQ|G|206
6SV4|1|YQ|U|207
6SV4|1|YQ|C|208
6SV4|1|YQ|A|209
6SV4|1|YQ|U|210
6SV4|1|YQ|A|211
6SV4|1|YQ|G|212
6SV4|1|YQ|A|213
6SV4|1|YQ|G|214
*
6SV4|1|YQ|C|226
6SV4|1|YQ|G|227
6SV4|1|YQ|U|228
6SV4|1|YQ|G|229
6SV4|1|YQ|U|230
6SV4|1|YQ|G|231
Current chains
- Chain YQ
- 25S rRNA
Nearby chains
- Chain XK
- 60S ribosomal protein L26-A
- Chain YE
- 60S ribosomal protein L4-A
- Chain YS
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: