J3_6SV4_122

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUAUG*CGUCAUAGAG*CGUGUG

Length

21 nucleotides

Bulged bases

6SV4|1|ZQ|U|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SV4_122 not in the Motif Atlas

Homologous match to J3_8P9A_044

Geometric discrepancy: 0.1278

The information below is about J3_8P9A_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97456.1

Basepair signature

cWW-cWW-F-F-cSS-cSW-cWW-tHS-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

6SV4|1|ZQ|C|185
6SV4|1|ZQ|U|186
6SV4|1|ZQ|A|187
6SV4|1|ZQ|U|188
6SV4|1|ZQ|G|189
*
6SV4|1|ZQ|C|205
6SV4|1|ZQ|G|206
6SV4|1|ZQ|U|207
6SV4|1|ZQ|C|208
6SV4|1|ZQ|A|209
6SV4|1|ZQ|U|210
6SV4|1|ZQ|A|211
6SV4|1|ZQ|G|212
6SV4|1|ZQ|A|213
6SV4|1|ZQ|G|214
*
6SV4|1|ZQ|C|226
6SV4|1|ZQ|G|227
6SV4|1|ZQ|U|228
6SV4|1|ZQ|G|229
6SV4|1|ZQ|U|230
6SV4|1|ZQ|G|231

Current chains

Chain ZQ

25S rRNA

Nearby chains

Chain ZE

60S ribosomal protein L4-A

Chain ZS

5.8S ribosomal RNA; 5.8S rRNA

Chain zK

60S ribosomal protein L26-A