J3_6T59_007

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

6T59|1|54|A|2396

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6T59_007 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.0925

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

6T59|1|54|C|2393
6T59|1|54|G|2394
6T59|1|54|A|2395
6T59|1|54|A|2396
6T59|1|54|G|2397
6T59|1|54|U|2398
6T59|1|54|G|2399
*
6T59|1|54|C|2805
6T59|1|54|A|2806
6T59|1|54|A|2807
*
6T59|1|54|U|2819
6T59|1|54|C|2820
6T59|1|54|U|2821
6T59|1|54|G|2822

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain R3

eL19

Chain g3

eL34