J3_6T59_012

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6T59_012 not in the Motif Atlas

Geometric match to J3_7A0S_009

Geometric discrepancy: 0.2924

The information below is about J3_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6T59|1|54|C|3937
6T59|1|54|G|3938
6T59|1|54|G|3939
*
6T59|1|54|C|4074
6T59|1|54|U|4075
6T59|1|54|G|4076
6T59|1|54|A|4077
6T59|1|54|C|4078
*
6T59|1|54|G|4168
6T59|1|54|G|4169
6T59|1|54|A|4170
6T59|1|54|C|4171
6T59|1|54|A|4172
6T59|1|54|G|4173

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain A3

Ribosomal protein L8

Chain G3

eL8

Chain N3

Ribosomal protein L15