3D structure

PDB id
6T59 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.11 Å

Loop

Sequence
UAUC*GUU*ACUAAUA
Length
14 nucleotides
Bulged bases
6T59|1|54|A|4464, 6T59|1|54|U|4465
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6T59_014 not in the Motif Atlas
Homologous match to J3_5TBW_014
Geometric discrepancy: 0.0992
The information below is about J3_5TBW_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_98597.1
Basepair signature
cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
Number of instances in this motif group
2

Unit IDs

6T59|1|54|U|4463
6T59|1|54|A|4464
6T59|1|54|U|4465
6T59|1|54|C|4466
*
6T59|1|54|G|4491
6T59|1|54|U|4492
6T59|1|54|U|4493
*
6T59|1|54|A|4507
6T59|1|54|C|4508
6T59|1|54|U|4509
6T59|1|54|A|4510
6T59|1|54|A|4511
6T59|1|54|U|4512
6T59|1|54|A|4513

Current chains

Chain 54
28S ribosomal RNA

Nearby chains

Chain B3
uL3
Chain O3
uL13
Chain V3
Ribosomal protein L23

Coloring options:


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