J3_6TC3_005

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6TC3|1|16S1|U|871, 6TC3|1|16S1|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TC3_005 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0543

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6TC3|1|16S1|C|826
6TC3|1|16S1|U|827
6TC3|1|16S1|U|828
6TC3|1|16S1|G|829
*
6TC3|1|16S1|C|857
6TC3|1|16S1|G|858
6TC3|1|16S1|G|859
6TC3|1|16S1|A|860
6TC3|1|16S1|G|861
*
6TC3|1|16S1|C|868
6TC3|1|16S1|G|869
6TC3|1|16S1|U|870
6TC3|1|16S1|U|871
6TC3|1|16S1|A|872
6TC3|1|16S1|A|873
6TC3|1|16S1|G|874

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S021

30S ribosomal protein S2

Chain S081

30S ribosomal protein S8

Chain S211

30S ribosomal protein S21