J3_6TC3_013

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

6TC3|1|16S1|U|1240, 6TC3|1|16S1|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TC3_013 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.1226

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6TC3|1|16S1|C|1237
6TC3|1|16S1|A|1238
6TC3|1|16S1|A|1239
6TC3|1|16S1|U|1240
6TC3|1|16S1|G|1241
*
6TC3|1|16S1|C|1296
6TC3|1|16S1|G|1297
6TC3|1|16S1|U|1298
6TC3|1|16S1|A|1299
6TC3|1|16S1|G|1300
6TC3|1|16S1|U|1301
6TC3|1|16S1|C|1302
6TC3|1|16S1|C|1303
*
6TC3|1|16S1|G|1334
6TC3|1|16S1|U|1335
6TC3|1|16S1|C|1336
6TC3|1|16S1|G|1337

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S071

30S ribosomal protein S7

Chain S131

30S ribosomal protein S13