J3_6TC3_018

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TC3_018 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.1442

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

6TC3|1|23S1|G|1055
6TC3|1|23S1|G|1056
6TC3|1|23S1|A|1057
*
6TC3|1|23S1|U|1081
6TC3|1|23S1|U|1082
6TC3|1|23S1|U|1083
6TC3|1|23S1|A|1084
6TC3|1|23S1|A|1085
6TC3|1|23S1|A|1086
6TC3|1|23S1|G|1087
*
6TC3|1|23S1|C|1102
6TC3|1|23S1|A|1103
6TC3|1|23S1|C|1104

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L361

50S ribosomal protein L36