J3_6TC3_027

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

6TC3|1|16S1|C|48, 6TC3|1|16S1|A|50, 6TC3|1|16S1|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TC3_027 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.0695

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6TC3|1|16S1|G|46
6TC3|1|16S1|C|47
6TC3|1|16S1|C|48
6TC3|1|16S1|U|49
6TC3|1|16S1|A|50
6TC3|1|16S1|A|51
6TC3|1|16S1|C|52
*
6TC3|1|16S1|G|359
6TC3|1|16S1|G|360
6TC3|1|16S1|G|361
6TC3|1|16S1|G|362
6TC3|1|16S1|A|363
6TC3|1|16S1|A|364
6TC3|1|16S1|U|365
6TC3|1|16S1|A|366
6TC3|1|16S1|U|367
*
6TC3|1|16S1|A|393
6TC3|1|16S1|G|394
6TC3|1|16S1|C|395

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S121

30S ribosomal protein S12

Chain S161

30S ribosomal protein S16