J3_6TC3_033

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

6TC3|1|23S1|A|504, 6TC3|1|23S1|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TC3_033 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0912

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

6TC3|1|23S1|G|30
6TC3|1|23S1|C|31
*
6TC3|1|23S1|G|474
6TC3|1|23S1|C|475
6TC3|1|23S1|G|476
6TC3|1|23S1|A|477
6TC3|1|23S1|A|478
6TC3|1|23S1|A|479
6TC3|1|23S1|A|480
6TC3|1|23S1|G|481
6TC3|1|23S1|A|482
6TC3|1|23S1|A|483
6TC3|1|23S1|C|484
*
6TC3|1|23S1|G|496
6TC3|1|23S1|A|497
6TC3|1|23S1|G|498
6TC3|1|23S1|U|499
6TC3|1|23S1|G|500
6TC3|1|23S1|A|501
6TC3|1|23S1|A|502
6TC3|1|23S1|A|503
6TC3|1|23S1|A|504
6TC3|1|23S1|A|505
6TC3|1|23S1|G|506
6TC3|1|23S1|A|507
6TC3|1|23S1|A|508
6TC3|1|23S1|C|509
6TC3|1|23S1|C|510

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L201

50S ribosomal protein L20

Chain L221

50S ribosomal protein L22

Chain L241

50S ribosomal protein L24