J3_6U48_007

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

6U48|1|CA|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6U48_007 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1181

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6U48|1|CA|C|1306
6U48|1|CA|A|1307
6U48|1|CA|A|1308
6U48|1|CA|G|1309
*
6U48|1|CA|C|1605
6U48|1|CA|C|1606
6U48|1|CA|C|1607
6U48|1|CA|A|1608
6U48|1|CA|A|1609
6U48|1|CA|A|1610
6U48|1|CA|C|1611
*
6U48|1|CA|G|1620
6U48|1|CA|U|1621
6U48|1|CA|G|1622

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C3

50S ribosomal protein bL34