J3_6V3D_015
3D structure
- PDB id
- 6V3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- CUUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 6V3D|1|AN1|U|41, 6V3D|1|AN1|U|447, 6V3D|1|AN1|C|455
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6V3D_015 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.1364
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
6V3D|1|AN1|C|39
6V3D|1|AN1|U|40
6V3D|1|AN1|U|41
6V3D|1|AN1|G|42
*
6V3D|1|AN1|C|444
6V3D|1|AN1|G|445
6V3D|1|AN1|A|446
6V3D|1|AN1|U|447
6V3D|1|AN1|A|448
6V3D|1|AN1|G|449
6V3D|1|AN1|U|450
6V3D|1|AN1|G|451
6V3D|1|AN1|A|452
6V3D|1|AN1|A|453
6V3D|1|AN1|C|454
6V3D|1|AN1|C|455
6V3D|1|AN1|A|456
6V3D|1|AN1|G|457
6V3D|1|AN1|U|458
6V3D|1|AN1|A|459
6V3D|1|AN1|C|460
*
6V3D|1|AN1|G|467
6V3D|1|AN1|G|468
6V3D|1|AN1|A|469
6V3D|1|AN1|A|470
6V3D|1|AN1|A|471
6V3D|1|AN1|G|472
Current chains
- Chain AN1
- 23s ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L34
- Chain E
- 50S ribosomal protein L4
- Chain P
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L23
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