J3_6VWN_021

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUA*UAG*CAUAAG

Length

12 nucleotides

Bulged bases

6VWN|1|2|U|2334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VWN_021 not in the Motif Atlas

Homologous match to J3_5J7L_045

Geometric discrepancy: 0.1873

The information below is about J3_5J7L_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_61124.2

Basepair signature

cWW-tWH-tWW-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

6VWN|1|2|C|2295
6VWN|1|2|U|2296
6VWN|1|2|A|2297
*
6VWN|1|2|U|2321
6VWN|1|2|A|2322
6VWN|1|2|G|2323
*
6VWN|1|2|C|2332
6VWN|1|2|A|2333
6VWN|1|2|U|2334
6VWN|1|2|A|2335
6VWN|1|2|A|2336
6VWN|1|2|G|2337

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain D

50S ribosomal protein L5

Chain M

50S ribosomal protein L18

Chain U

50S ribosomal protein L27