J3_6VYT_004

3D structure

PDB id

6VYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A2 (TTC-A2) containing a 15 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6VYT|1|D|U|871, 6VYT|1|D|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VYT_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0723

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6VYT|1|D|C|826
6VYT|1|D|U|827
6VYT|1|D|U|828
6VYT|1|D|G|829
*
6VYT|1|D|C|857
6VYT|1|D|G|858
6VYT|1|D|G|859
6VYT|1|D|A|860
6VYT|1|D|G|861
*
6VYT|1|D|C|868
6VYT|1|D|G|869
6VYT|1|D|U|870
6VYT|1|D|U|871
6VYT|1|D|A|872
6VYT|1|D|A|873
6VYT|1|D|G|874

Current chains

Chain D

16S rRNA

Nearby chains

Chain F

30S ribosomal protein S21

Chain G

30S ribosomal protein S2

Chain N

30S ribosomal protein S8