J3_6VYT_019

3D structure

PDB id

6VYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A2 (TTC-A2) containing a 15 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

6VYT|1|a|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VYT_019 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1109

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6VYT|1|a|C|1306
6VYT|1|a|A|1307
6VYT|1|a|A|1308
6VYT|1|a|G|1309
*
6VYT|1|a|C|1605
6VYT|1|a|C|1606
6VYT|1|a|C|1607
6VYT|1|a|A|1608
6VYT|1|a|A|1609
6VYT|1|a|A|1610
6VYT|1|a|C|1611
*
6VYT|1|a|G|1620
6VYT|1|a|U|1621
6VYT|1|a|G|1622

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34