J3_6VYT_032

3D structure

PDB id

6VYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A2 (TTC-A2) containing a 15 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

6VYT|1|a|A|504, 6VYT|1|a|A|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VYT_032 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.103

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

6VYT|1|a|G|30
6VYT|1|a|C|31
*
6VYT|1|a|G|474
6VYT|1|a|C|475
6VYT|1|a|G|476
6VYT|1|a|A|477
6VYT|1|a|A|478
6VYT|1|a|A|479
6VYT|1|a|A|480
6VYT|1|a|G|481
6VYT|1|a|A|482
6VYT|1|a|A|483
6VYT|1|a|C|484
*
6VYT|1|a|G|496
6VYT|1|a|A|497
6VYT|1|a|G|498
6VYT|1|a|U|499
6VYT|1|a|G|500
6VYT|1|a|A|501
6VYT|1|a|A|502
6VYT|1|a|A|503
6VYT|1|a|A|504
6VYT|1|a|A|505
6VYT|1|a|G|506
6VYT|1|a|A|507
6VYT|1|a|A|508
6VYT|1|a|C|509
6VYT|1|a|C|510

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain 3

50S ribosomal protein L24

Chain z

50S ribosomal protein L20