J3_6VYT_035

3D structure

PDB id

6VYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A2 (TTC-A2) containing a 15 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VYT_035 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0555

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6VYT|1|a|G|1424
6VYT|1|a|G|1425
6VYT|1|a|G|1426
6VYT|1|a|A|1427
6VYT|1|a|C|1428
6VYT|1|a|G|1429
*
6VYT|1|a|C|1564
6VYT|1|a|C|1565
*
6VYT|1|a|G|1568
6VYT|1|a|A|1569
6VYT|1|a|A|1570
6VYT|1|a|A|1571
6VYT|1|a|A|1572
6VYT|1|a|G|1573
6VYT|1|a|C|1574

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2