J3_6VYU_004

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6VYU|1|D|U|871, 6VYU|1|D|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VYU_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0724

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6VYU|1|D|C|826
6VYU|1|D|U|827
6VYU|1|D|U|828
6VYU|1|D|G|829
*
6VYU|1|D|C|857
6VYU|1|D|G|858
6VYU|1|D|G|859
6VYU|1|D|A|860
6VYU|1|D|G|861
*
6VYU|1|D|C|868
6VYU|1|D|G|869
6VYU|1|D|U|870
6VYU|1|D|U|871
6VYU|1|D|A|872
6VYU|1|D|A|873
6VYU|1|D|G|874

Current chains

Chain D

16S rRNA

Nearby chains

Chain F

30S ribosomal protein S21

Chain G

30S ribosomal protein S2

Chain N

30S ribosomal protein S8