J3_6VYU_018

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VYU_018 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0593

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6VYU|1|a|C|1298
6VYU|1|a|G|1299
6VYU|1|a|G|1300
6VYU|1|a|A|1301
6VYU|1|a|A|1302
6VYU|1|a|G|1303
*
6VYU|1|a|C|1625
6VYU|1|a|A|1626
6VYU|1|a|G|1627
*
6VYU|1|a|C|1639
6VYU|1|a|A|1640
6VYU|1|a|A|1641
6VYU|1|a|G|1642

Current chains

Chain a

23S rRNA

Nearby chains