J3_6VYU_019

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

6VYU|1|a|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VYU_019 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.111

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6VYU|1|a|C|1306
6VYU|1|a|A|1307
6VYU|1|a|A|1308
6VYU|1|a|G|1309
*
6VYU|1|a|C|1605
6VYU|1|a|C|1606
6VYU|1|a|C|1607
6VYU|1|a|A|1608
6VYU|1|a|A|1609
6VYU|1|a|A|1610
6VYU|1|a|C|1611
*
6VYU|1|a|G|1620
6VYU|1|a|U|1621
6VYU|1|a|G|1622

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34